Upenn computational biology research. Durham, Chong Huynh, and Hernando A.
Upenn computational biology research in statistics. It leverages large-scale data, such as social media interactions, digital footprints, and online behaviors, to gain insights into human behavior, societal trends, and group dynamics. Precision and Computational Diagnostics, Cancer and Immunobiology International Society for Computational Biology, 2006-present American Association Email: rradhak@seas. edu 215-573 BIOL 5535: Introduction to Computational Biology & Biological Modeling; CIS 5450: Big Data Analytics; BIOL 5860: Math Modeling in Biology; This course provides broad overview of bioinformatics and computational biology as applied to biomedical research. Kimberly Gallagher Department Chair Dejian Ren PGFI has provided access to genomics technologies, assisted in the recruitment of an expanded genomics-related faculty, supported the research and service capabilities of bioinformatics and computational biology at the Penn Center for Bioinformatics (PCBI), expanded departmental and school-wide genomics cores and research, and funded The mission of the Graduate Group in Genomics and Computational Biology (GCB) is to train the next generation of quantitative scientists with an integrated and deep understanding of the biological basis of health and disease. D. At the same time, we strive to ground our program in the empirical studies of cognition in Linguistics, Psychology, and Neuroscience; tools are Research Interests. About half a year of it was spent in a neurodevelopment lab as an undergraduate research assistant, where I mainly performed genotyping and profiling mutant mice's genotype and abnormal neural development. 5-year full-time research experience. majors are able to conduct biological research in virtually any lab on Penn’s campus, including the medical school and hospital system. edu P: (215) 898-7121 My educational background is interdisciplinary, at the intersection of biology, engineering, computer science, and biostatistics. Contact Us Department of Biochemistry and Biophysics. Hi! My Name is Asim Handy and I am a sophomore studying Bioengineering, with minors in statistics and chemistry. Navish aspires to pursue a career in medicine in the future. Ecology and Biodiversity; Evolution; Plant Biology; Microbiology; Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . Currently Principal Investigator at Zhejiang University. Theory Seminar Fall 2024: 9/13 through 12/06. Algorithms and Machine Learning; Artificial Intelligence; Chromatin Remodeling, Structure, and The Perelman School of Medicine (PSOM) has formidable strength in basic and translational research, and is poised to grow chemical biology that could significantly extend the reach of the research and provide the ‘glue’ to bring these disciplines together to maximize the development of therapeutics and imaging agents for use in clinical The mission of the Graduate Group in Genomics and Computational Biology (GCB) Current Position: Machine Learning Scientist, Visa Research Publications. Integrative seminar on current biological research for first Administrative Director, Division of Precision and Computational Diagnostics Contact Information Tel: 215-615-1783 Email: christopher. Independent Research (NRSC/BIBB, BIOL, COGS, PSYC, EE, BE, CIS, PHYS, MATH - Independent Research may University of Pennsylvania Biology Department 102 Leidy Lab 3740 Hamilton Walk Philadelphia, PA 19104-6018. edu), A postdoctoral position for a computational biologist is available in the interdisciplinary lab of Dr. Description of Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . 33rd Street, Rm. ), Molecular Genetics, Stanford University, Palo Alto, CA 1985-1988 Advanced Topics in Current Biology Research. When I arrived at Penn, I had only a little computational research experience and knew I wanted to get involved in wet lab research, but had no idea where to start. Good programming skills are I lead a broad research program in developing statistical methods and computational tools to address cutting-edge problems in public health by integrating large-scale, multi-source datasets. Cell and Developmental Biology, Computational Biology, Genetics, Epigenetics, Genomics Read Bio Mark Goulian Charles and William L. Maxwell is a member of the Graduate Group in Genomics and Computational Biology (GCB) and Cell & Molecular Biology Graduate Group (CAMB). Department of Genetics, Institute for Biomedical Informatics, Center for AI and Data Science for Integrated Diagnostics Research focuses on methodology development to understand the dynamics of disease activities and inform health management using multivariate Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . Postdoctoral Researcher. edu P: (215) 898-7121 F: (215) 573-9454 . Ecology and Biodiversity, Evolution Read Bio. Intelligent Systems, Artificial Intelligence, and Data The mission of the Graduate Group in Genomics and Computational Biology You may schedule appointments with her directly [nicobr@upenn. Katie Barott. Specialty Division. This includes the study of pediatric We develop computational methods and genomic technologies for studying transcriptomic and proteomic complexity in bulk tissues and single cells (Nature Methods, 2019; American Journal The Machine Biology Group aims to develop the first computer-made tools and medicines. Computational Biology, Ecology and Biodiversity, Evolution, Neurobiology, Behavior, and Physiology Read Bio. Biomedical Devices. Graduate Chair: Translational and basic-science research in the Department of Pathology and Laboratory Medicine at Penn is conducted in many areas, including Autoimmunity and Allergy, Bioinformatics, Cancer Biology, Cell Biology and Signal Transduction, Developmental Mechanisms, Developmental, Stem Cell, & Regenerative Biology, Diagnostic Innovation, Experimental Include Specific Aims and Research Strategy (Significance, Innovation and Approach). On the computational end, courses . People. Erol Akçay Ombudsman Research; People; Publications; Positions; Contact; Menu; Search for: Research. Navish Yarna is a Senior at the University of Pennsylvania, majoring in Biology. Justin Walsh. Please check the lab website for ongoing research projects and opportunities for joining the lab. Ph. New trainees are selected each May by a competitive process. upenn. The Network is a global community for Black women advancing biology through a computational lens. UPenn has an interactive community of researchers with interests in evolutionary biology and genomics, the genetics of complex traits, and translational medicine. At the same time, we strive to ground our program in the empirical studies of cognition in Linguistics, Psychology, and Neuroscience; tools are Microbiology research in the Biology Department includes programs on all three domains of life and spans ecology, evolution, pathogenesis, systems biology, physiology, cell biology, and genetics. edu) Research; Research - Plant Biology Humankind depends on plant growth and productivity not only for human sustenance, but also for alternatives to fossil fuel or nuclear energy. A. Evolution. edu P University of Pennsylvania Biology Department 102 Leidy Lab 3740 Hamilton Walk Philadelphia, PA 19104-6018. edu Why did you choose to join the Trainee Advocacy Alliance? Helping talented young scientists overcome the challenges and difficulties of graduate school to thrive and succeed has been the most With approximately 51 tenure-track, tenured, and research faculty and 210 PhD students — and strong collaborators across campus — we cover a wide array of research areas across the computer and information sciences. Kimberly Gallagher Department Chair Dejian Ren Masters Biotechnology Lab: Free Elective: Select 1 free elective: 1: 5000+ level 1 CU courses in the following areas are allowed: ANAT BBCB BCHE BE BIOE BIOL BIOM BMIN BSTA BIOT CAMB CBE CHEM CIS CIT DATA DATS EESC ENMG EAS (excluding EAS 8960 and EAS 8970) ENGR ENM ENVS EPID GENC GCB HCIN HCMG HPR HQS IMUN IMP IPD MKTG MGMT Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . 304J Lynch Laboratory. Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . edu; Lynch 304G) Office Hours: By appointment Teaching Assistants: Ammon Perkes (perkes. 242 Anatomy-Chemistry Building 3620 Hamilton Walk Philadelphia, PA 19104-6073 United States 215-898-5669 Directions Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . The goal of our work was to help make sense of the enormous amount of biomedical data generated by high-throughput genomic approaches and synthesize them into something more than the sum of the parts. Hongzhe Li. Our past research findings have helped to establish the prevailing view that histone modifications regulate genomic functions, including transcription of genes, DNA replication during With approximately 51 tenure-track, tenured, and research faculty and 210 PhD students — and strong collaborators across campus — we cover a wide array of research areas across the computer and information sciences. John I. Graduate Group Vice Chair. We encourage each student to partner with a lab and engage in research early in their undergraduate career, culminating in research presentations and Key words: Cancer biology, cancer genetics, genomics, computational biology, oncogenes, targeted therapy, functional imaging, stem cells, development. pohlschr@sas. We have developed novel algorithms for evolutionary tree estimation (e. Graduate Chair: GCB 5370 Advanced Computational Biology. Researchers in this lab are developing tools that enable researchers to mine and integrate data from a variety of different sources and types of experiments. 311A University of Pennsylvania Philadelphia, PA 19104-6391 biotech@seas. You will be assigned to one of the Math Major Advisors who will discuss your current and future plans with you. bvoight@upenn. Course List; Code Title Course Units; Biomedical Data Science and Computational Medicine: Employs concepts and infrastructure from computer science and broad-based principles from engineering, applied mathematics, physics, and chemistry, to navigate large data sets of biological information and model biomolecules to gain insight into complex biological systems. Kimberly Gallagher Department Chair Dejian Ren Research Interests. Read more about Professor Arratia and our lab history! Cell and Molecular Biology. BMIN 5330 is an introductory course in probability theory and statistical inference for graduate students in Genomics and Computational Biology. ammon@gmail. We provide a comprehensive training program in Genomics and Computational Biology that gives students a broad foundation in the biological and quantitative sciences along with practical Computational Biology focuses on understanding biological systems through computational models and simulations. He is a member of the Genomics & Computational Biology and the Biochemistry & Molecular Biophysics graduate groups at the University of Pennsylvania. Description of the trainee/scholar's research project and progress: My research involves The mission of the Graduate Group in Genomics and Computational Biology (GCB) is to train the next generation of quantitative scientists with an integrated and deep understanding of the The mission of the Graduate Group in Genomics and Computational Biology (GCB) is to train the next generation of quantitative scientists with an integrated and deep understanding of the The Computational Genomics training grant provides support to students in years three through five (dissertation level) whose PhD dissertation research is in the areas of computational The mission of the Graduate Group in Genomics and Computational Biology (GCB) is to train the next generation of quantitative scientists with an integrated and deep understanding of the This program is open to all experience levels and aims to promote diversity and inclusion in the fields of genetics, epigenetics, bioengineering, and computational biology. Assigned readings will cover algorithms and data analysis techniques in computational biology. Dr. AI for Health aims to improve patient care by developing predictive models, enhancing medical imaging, enabling The Computational Genomics training grant provides support to students in years three through five (dissertation level) whose PhD dissertation research is in the areas of computational biology and bioinformatics. They will work through a series of steps to collect, organize, analyze and present textual data by using automated tools toward a final project of relevant interest. Intelligent Systems, Artificial Intelligence, and Data GCB 5330 Statistics for Genomics and Biomedical Informatics. ereavy@seas. Swimming of microorganisms and active matter. and students with expertise in biology, medicine, dentistry, nursing, veterinary medicine, computer and information science, and the management and social sciences. Welcome to the Computational Biology and Informatics Laboratory (CBIL) in the Institute for Biomedical Informatics. 10 course units are required for the MSE in Scientific Computing. GAPSA administers a research student travel grant which students can apply for; Pre-dissertation Research Candidacy Exam: Dissertation: Year 2+ Dissertation: Dissertation: Dissertation: Additional example schedules may be found here, at the bottom of the page. Graduate Studies. Website. Plant Biology. His research interests include Cell Biology, Computational Dermatology, and Translational Research. Microbiology. ***BE We have rotation projects available. Learn More We recognize the importance of specialized skills, especially those honed in the biological, economic, computational and mathematical sciences, in cognitive research, education, and The Fu Foundation School of Engineering and Applied Science of Columbia University; 500 W. Computational Biology at Caltech is a vibrant area that encompasses methods development for biological data analysis, modeling of biological systems, and applications of computer science to biomedical problems. 5 Test scores: None Research: 4 years synthetic biology lab research in undergrad, one very high impact and one low impact publication (co-author for both), NSF REU, multiple posters/presentations. Kimberly Gallagher Department Chair Dejian Ren Graduate Chair. 0 cu) and BIOL 2311 or BIOL 2140 or Opportunities . Rob Lee Academic Advisor Office: Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . Graduate studies in biomedical sciences at the Perelman School of Medicine of the University of Pennsylvania fall under the auspices of the Biomedical Graduate Studies (BGS) program, the academic home at Penn for all students pursuing a PhD degree in the basic biomedical sciences or dual MD-PhD or VMD-PhD degrees. in the following areas will help to get involved in the lab’s research: algorithms/statistics/machine learning/information theory/statistical inference and of course computational biology. Our approach is to expand nature’s repertoire to build novel synthetic molecular tools with useful Genomics and computational biology are now at the center of biomedical research. 204F Lynch Laboratory. quality of the oral presentation, 3) defense of the proposal, and 4) general knowledge of computational biology, their Approach, and their Biological Specialty. I completed my PhD in genetics (with a focus on Undergraduate Research Assistant. Course for graduate students planning research in computational biology and genomics. There are also research opportunities open within our lab for Penn undergraduate students. mignogna@pennmedicine. Faculty page. These disciplines take a holistic approach to ask about the origins, functions, and interactions of The mission of the Graduate Group in Genomics and Computational Biology (GCB) is to train the next generation of quantitative scientists with an integrated and deep understanding of the MD-PhD Candidate, Genomics and Computational Biology Mentor: Gerd Blobel, MD, PhD. GCB 5370: Advanced Computational Biology; STAT 4310: Statistical Inference (Fall/Spring) STAT 5000: Applied Regression and Analysis of Variance (Fall) STAT 9270: Bayesian Statistics (Spring) Biological Specialty Courses. seanwoo at sas. The Vahedi laboratory is part of the Department of Genetics, Perelman School of Medicine at the University of Pennsylvania. Kimberly Gallagher Department Chair Dejian Ren Computational Biology and Research Informatics. The proposal should clearly describe your novel biological and computational hypotheses. edu. goulian@sas. Biofluid dynamics in microfluidics. Kimberly The goal of this course is to educate students in core principles and expose them to cutting-edge research in musculoskeletal biology and bioengineering through (1) lectures covering the basic engineering principles, biological fundamentals, and clinical practices involved in the function, repair, and regeneration of the musculoskeletal tissues University of Pennsylvania Biology Department 102 Leidy Lab 3740 Hamilton Walk Philadelphia, PA 19104-6018. Penn undergraduate students. del Portillo My most relevant research has to be my summer internship for a biomedical informatics program, where I was assigned a project to leverage deep learning for predictive modeling. GCB 5360/BIOL 5536/CIS 5360 – Fundamentals of Computational Biology; GCB 5370 Advanced Computational Biology; Biomedical Devices. His research interests include Cell Biology, Computational Dermatology, Hey everyone, I saw a 2019 post for computational biology/bioinformatics/systems biology, but nothing posted yet for the 2020 cycle. DEI Initiatives; Professional Development for Teachers; please list your research interest and the faculty members with whom you would wish to work on your application. Cell and Developmental Biology, Ecology and Biodiversity, Microbiology, Computational Biology, Evolution, Genetics, Epigenetics, Genomics, biology@sas. Applied fluid dynamics. S. We encourage each student to partner with a lab and engage in research early in their undergraduate career, culminating in research presentations and He obtained his master's degree in drug discovery and development at University College London, UK, in 2018. Golnaz Vahedi. Graduate Group Affiliations: Biochemistry And Molecular Biophysics Introduction to Research in Computational Biology (rotation units, Spring semester) 2-12: CMPBIO 275: Computational Biology Seminar/Journal Club: 1: STAT 201A: Introduction to Probability at an Advanced Level (Stat 200A and 201A are the same content, but offered on different schedules. Our faculty’s expertise and research interests are broad Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . Graduate Chair: Please contact bio-undergradaute@sas. Algorithms and Machine Learning; Artificial Intelligence; Chromatin Remodeling, Structure, and Current undergraduate students will have the opportunity to engage in diverse areas of genetic research, including the genetics of human disease, model organism genetics, genomics and computational biology, and epigenetics. Computational Biology: Designing and Mining (Pathogen) Genome Databases Advanced Topics in Current Biology Research. The GCB program is designed to provide mentorship and develop skills that will produce independent research scientist in the field of genomics and computational biology. Introduction to Computational Biology & Biological Modeling: BIOL 5536. Mecky Pohlschröder. Methods for addressing these biases, such as text We are interested in such bio-generative processes and understanding the temporal control, architecture, and evolution of these processes. Independent Research (NRSC/BIBB, BIOL, COGS, PSYC, EE, BE, CIS, PHYS, MATH - Independent Research may also be performed in other fields departments provided it is relevant to computational neuroscience and is approved by the minor advisors) We have high-tech computational labs, modern pilot-scale processing units, and specialized areas for bioengineering and nanotechnology research. Brent Helliker. Computational Biology; Outreach & DEI Initiatives. , Harvard University, 1990 evolve and interact with other pathways in the cell. BIOL 240: Ecology: From Individuals to Ecosystems (Fall, with Brent Helliker) biology@sas. Computational Biology, Genetics, Epigenetics, Genomics, Plant Biology Read Bio. edu with any questions. Please contact bio-undergradaute@sas. Algorithms and Machine Learning; Artificial Intelligence; Chromatin Remodeling, Structure, and Computational Biology. Our lab is within the Department of Biostatistics, Epidemiology and Informatics (DBEI) at the BIOL 4536/BIOL 5535/CIS 4360: Introduction to Computational Biology & Biological Modeling. Since 2007, Jim Eberwine (Pharm) and I have been engaged in multiple joint projects concerning genomics of University of Pennsylvania Biology Department 102 Leidy Lab 3740 Hamilton Walk Philadelphia, PA 19104-6018. Genetics, Epigenetics, Genomics. Computational Biology. You can also email Erol Akçay at eakcay@sas. edu P: (215) 898-7121 F: (215) 573-9454 The span of problems in TCS include both the design of new models for computational problems as well as the study of efficient algorithms (and computational complexity) for various tasks in well established models. His current research merges the fields of computational biology, biomedical data science, RNA Introduction to Research in Computational Biology (rotation units, Spring semester) 2-12: CMPBIO 275: Computational Biology Seminar/Journal Club: 1: STAT 201A: Introduction to Research in the Matthews group unites enzymology and chemical biology to develop novel chemical proteomics technologies for the discovery of enzyme cofactors and regulatory post BIOL 527: Genetics for Computational Biology (Fall and Spring) BIOL 540: Genetic Analysis (Spring, not offered every year) Research This track requires students to complete two Computational Biology (ASCB) Undergraduate Research; Internships + Jobs; Student Groups; Accreditation; Your CIS Contacts: Jessica Kimpel Dr. Sometimes choosing distinct research topics can help you figure out what really excites you. Electron Microscopy I have approximately 1. Requirements for the Ecology and Evolutionary Biology Concentration . The goal of the course is to provide foundation of basic concepts and tools as well as hands-on practice in their application to problems in genomics. Ariel Hippen Using computationally-derived metadata to unlock the tumor microenvironment in The mission of the Graduate Group in Genomics and Computational Biology (GCB) is to train the next generation of quantitative scientists with an integrated and deep understanding of the biological basis of health and disease. Ashvathi Raghavakaimal – Graduate Student Please follow the links above for detailed description of our research interests and opportunities for joining the lab. g. BIOL 4536 Introduction to Computational Biology & Biological Modeling (1 cu) [BIOL 437] BIOL 3999 Interdisciplinary Research Project (1 cu) [BIOL 399] Two additional Biology Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . My current goal is to pursue PhD in quantitative biology Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . BIOL 4536 Introduction to Computational Biology & Biological Modeling (1 cu) [BIOL 437] BIOL 3999 Interdisciplinary Research Project (1 cu) [BIOL 399] Two additional Biology Translational and basic-science research in the Department of Pathology and Laboratory Medicine at Penn is conducted in many areas, including Autoimmunity and Allergy, Bioinformatics, Cancer Biology, Cell Biology and Signal Transduction, Developmental Mechanisms, Developmental, Stem Cell, & Regenerative Biology, Diagnostic Innovation, Experimental PLoS Computational Biology (2005-) (full serial archives) Bioinformation (full serial archives) (if any) are from related and broader terms. Murray, PhD Associate Professor, Genetics Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . Levin 352. Contact: nyarna@sas. BIOL 5535: Introduction to Computational Biology & Biological Modeling; BIOL 5860: Mathematical Modeling in Biology; BMIN 5020: Database and Data Integration; Current undergraduate students will have the opportunity to engage in diverse areas of genetic research, including the genetics of human disease, model organism genetics, genomics and computational biology, and epigenetics. The aim of the Philadelphia Program for Mentored Research Training in Kidney, Urologic, and Hematologic Diseases (PERFORM-KUH) is to create a comprehensive training program in Philadelphia that encompasses research training in science related to nephrology, urology, and hematology with a focus on kidney, genitourinary tract, and benign hematological diseases Undergraduate Research Assistant. Dear Computational & Systems Biology Students, Faculty, Staff, and Community, We will introduce you to computational research techniques and to the research projects that labs are conducting. Training activities of the grant include participation in the weekly Genomics and The Cell and Molecular Biology Graduate Group (CAMB) is an interdisciplinary graduate program, providing rigorous training in modern cell and molecular biology. Raj Lab Holiday Party 2023. Standing Faculty. McCallum@pennmedicine. I thought I'd get it started for this year I am a current junior at UPenn (CAS & Wharton) pursuing B. Kimberly Gallagher Department Chair Dejian Current projects include the development of computational tools to call structural variants and DNA modifications from long-read the application of systems biology approaches on single-cell gene The research in our laboratory focuses on the development of bioinformatics methods to improve our understanding of the genetic basis of human The work in the laboratory ranges from neural circuits level experiments to computational-based approaches for tracking group behavior. Presentation Clinical Research Informatics Core. Kimberly Gallagher Department Chair Dejian Ren BIOL 4536/BIOL 5535/CIS 4360: Introduction to Computational Biology & Biological Modeling. Computational Biology, Genetics, Epigenetics, Genomics Read Bio. Research within the Department of Bioengineering transcends many disciplines and includes faculty and resources that span the entire University including the medical and veterinary schools, the School of Arts and Sciences, and colleagues in the School of Engineering and Applied Science. edu or follow him on BlueSky or Mastodon. Xing has an extensive publication record in bioinformatics, genomics, and RNA biology. lee@pennmedicine. computational biology, databases, game theory and data privacy. , horizontal transfer estimates), transmembrane protein annotation Associate Professor of Biochemistry and Biophysics Department: Biochemistry and Biophysics. edu Email: nyarna@sas. edu 215-573-6991. Cara Brand. We conduct state-of the art research, specifically focussing on methods development The Levine Lab is housed in UPenn’s Department of Biology (www. Yale - Computational Biology and Bioinformatics Stanford - Biomedical Informatics Harvard - Bioinformatics Brown - Biomedical Informatics Boston University Key words: Cancer biology, cancer genetics, genomics, computational biology, oncogenes, targeted therapy, functional imaging, stem cells, development. To apply, please Computational Biology. Faculty & Research. The mission of the Graduate Group in Genomics and Computational Biology (GCB) is to train the next generation of quantitative scientists with an integrated and deep understanding of the biological basis of health and disease. Research. 0 cu) [BIOL 101 and BIOL 102]Chemistry (2 CU): Contact Us Department of Biochemistry and Biophysics. Tianhua's expertise includes computational drug discovery, machine learning, chemistry, and molecular biology. The School of Engineering and Applied Science previously offered a degree in Computational Biology but that is no longer available. Erol Akçay Ombudsman Research Interests. Scott Poethig Undergraduate Chair. 9-125 Smilow Center. Path BioResource was created by the Department of Pathology and Laboratory Medicine to provide administrative support to the departmentally-based shared resource laboratories. Research Investigator. Our team has been in the vanguard of We emphasize strong statistical and computational component to proposed research and training curriculum. It is important that you see this advisor at least once per semester thereafter. Associate Professor of Biology. Introductory computational biology course designed for both biology students and computer science, engineering students. Education. Genetics, Epigenetics, Genomics, Computational Biology Read Bio. We have made changes to the biology major requirements and curriculum to reflect the multidisciplinary aspects of biology. The Network is comprised of exciting women across all degree and professional levels from an array of backgrounds in biology, computer science, mathematics, bioengineering, biochemistry, Jennifer McCallum - Lab Manager Jennifer. 103H Lynch Laboratory. Through partnering with the School of Medicine administration, as well as Centers and Institutes within the University Biology. Tien-chi Pan – Staff Computational Biologist. They will work through a series of Program of Study. edu Computational Algorithms and Quantitative Biology—Over last 25 years, my lab has been actively engaged in developing novel algorithms, statistical analyses, and quantitative models of biological data. wan-ping. The course will cover PHYS 5585/PHYS 585: Theoretical and Computational Neuroscience. Students only take one of these. Erol Akçay Ombudsman Research directions in the department include self-assembly at nano- and micro-scale, interfacial formation of suprastructures, investigation of structure-property relationship at the nanoscale, biomedical application of polymer-based vesicles & stimuli-responsive materials, and computational prediction of crystallization and materials dynamics . BIOL 4536 Introduction to Computational Biology and Biological Modeling (1 cu; fall only) Advanced Experimental Research (2 cu): BIOL 3711 Microbial Diversity and Pathogenesis Laboratory (1 cu; spring) Please follow the links above for detailed description of our research interests and opportunities for joining the lab. Currently pursuing his passion in Computational Biology Research at the Childrens Hospital in Philadelphia. Kimberly Gallagher Department Chair Dejian Ren The mission of the Graduate Group in Genomics and Computational Biology (GCB) is to train the next generation of quantitative scientists with an integrated and deep understanding of the biological basis of health and disease. We have rotation projects available. . edu MINING BIOLOGY One of our core missions is to mine the world's biological information as a source of antibiotics and other useful molecules. The course will cover The University of Pennsylvania Post-Baccalaureate Research Education Program (PennPREP) offers a one-to-two-year research experience for students who have completed their bachelor’s degree, are interested in pursuing a doctoral degree in the biomedical sciences, and would benefit from protected time to develop additional skills research. New students are encouraged to consider the BAS or BSE in Computer and Information Science, which, starting in Fall 2020, will offer multiple opportunities to blend computer science, data science, and biomedicine through concentrations. To get an overview of some of the projects and activities across the department, please see here. Elastic instabilities. BBCB 5850: Wistar Cancer Biology: Signaling Pathways in Cancer (Fall) BIOL 4220: Human Genetics and Genomics (Spring, odd years) She is Associate Editor of Annals of Applied Statistics, Statistics in Biosciences, PLOS Genetics, and PLOS Computational Biology, and was a regular member of the NIH Genomics, Computational Biology and Technology study section (2011-2017) and a member of the review committee of its Center for Inherited Disease Research (2013-2017). Send your proposal to your committee and the graduate group coordinator at least one week prior to the meeting. Dr YANG ZHU. His research interest is in the development of novel therapeutics against human diseases, for instance, Alzheimer's disease. Dhruv Pant – Staff Computational Biologist. Currently Senior Lecturer UPenn Biology. Many areas in genetics, ecology, and evolution depend on sophisticated quantitative analysis. Graduate Student Groups: Graduate Association of Bioengineers The Laboratory for Single Cell Data Science at the University of Pennsylvania is home to a multidisciplinary team including statisticians, bioinformaticians and students from a wide range of disciplines such as applied math, medicine and computational biology. Adjunct Faculty Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . Courses Taught. Erol Akçay Ombudsman Bioengineering Research Areas. In conjunction with the Biomedical Curriculum and Academic Standards Committee, the GCB Advising Committee is responsible for tracking students’ progress throughout the course of their studies. New York University (2006) Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . Studying the role SWI/SNF ATPase SPLAYED in stem cell Research. Affiliated Graduate Groups: Cell and Molecular Biology -- Developmental, Stem Cell, and Regenerative Biology Email Address: kesslerd@pennmedicine. edu The Petersson laboratory at the University of Pennsylvania uses the techniques of organic synthesis, molecular biology, physical chemistry, computational modeling, and cell biology to study protein folding and protein-protein interactions, with applications in The mission of the Graduate Group in Genomics and Computational Biology (GCB) is to train the next generation of quantitative scientists with an integrated and deep understanding of the biological basis of health and disease. Dr CHANG-SEOB KWON. edu P: (215) 898-7121 BIOL 4536/BIOL 5535/CIS 4360: Introduction to Computational Biology & Biological Modeling. They include diverse state-of-the-art technology that enables our faculty, postdoctoral trainees, students and visiting scientists to conduct a wide range of cutting-edge studies in Earth and environmental science. Day Distinguished Professor in the Natural Sciences Our research addresses these questions using the tools and principles of biophysics, including thermodynamics, statistical mechanics, simulations, and computational geometry. edu Research Website | Publications . edu P: (215) 898-7121 Research in the Matthews group unites enzymology and chemical biology to develop novel chemical proteomics technologies for the discovery of enzyme cofactors and regulatory post-translational modifications (PTMs) that cannot readily be predicted by gene or protein sequence. All Simulations count as Applications, all Applications count as Free Electives (cannot go The central theme of our lab is focused on developing and applying informatics, computing and data science methods for discovering actionable knowledge from complex biomedical and Dr. 236 Lynch Laboratory. Kimberly Gallagher Department Chair Dejian Ren Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . Progress in Brain Research, Vol 212: 297 biology@sas. 242 Anatomy-Chemistry Building 3620 Hamilton Walk Philadelphia, PA 19104-6073 United States 215-898-5669 Directions We are interested in such bio-generative processes and understanding the temporal control, architecture, and evolution of these processes. , Cell Reports Masters Biotechnology Lab: Free Elective: Select 1 free elective: 1: 5000+ level 1 CU courses in the following areas are allowed: ANAT BBCB BCHE BE BIOE BIOL BIOM BMIN BSTA BIOT CAMB CBE CHEM CIS CIT DATA DATS EESC ENMG EAS (excluding EAS 8960 and EAS 8970) ENGR ENM ENVS EPID GENC GCB HCIN HCMG HPR HQS IMUN IMP IPD MKTG MGMT The span of problems in TCS include both the design of new models for computational problems as well as the study of efficient algorithms (and computational complexity) for various tasks in well established models. Mia Levine Associate Chair. - Upenn - Genomics and computational biology - UCSF - Biological and Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . Through its programs and services, IBI: Develops innovative computational methods for artificial intelligence, data integration, data mining Please contact bio-undergradaute@sas. Graduate Chair: PHYS 5585/PHYS 585: Theoretical and Computational Neuroscience. Heather Martin - Sr. About Ravi Radhakrishnan, Ph. Introductory Biology (3 CU): Track 1: BIOL 1121 with 1123 and BIOL 1124 (2. Erol Akçay Ombudsman The departmental research facilities are housed in Hayden Hall and the nearby David Rittenhouse Laboratory. Identifying the upstream regulators of LEAFY. Post-doc (Helen Hay Whitney Fdn. edu] or by calling 215-898-7021 (press 2). Matt Paul – Postdoctoral Researcher. bio. edu P: (215) 898-7121 Current projects include the development of computational tools to call structural variants and DNA modifications from long-read the application of systems biology approaches on single-cell gene The research in our laboratory focuses on the development of bioinformatics methods to improve our understanding of the genetic basis of human PGFI has provided access to genomics technologies, assisted in the recruitment of an expanded genomics-related faculty, supported the research and service capabilities of bioinformatics and computational biology at the Penn Center for Bioinformatics (PCBI), expanded departmental and school-wide genomics cores and research, and funded Faculty Leader. com) and Yongjun Li (yjli@sas. Schools like University of Minnesota - Twin Cities, University of Pittsburgh, Michigan State University, and Iowa State University (just to name a few) all have good Welcome to the Statistical Genetics and Genomics Laboratory, headed by Prof. 215-898-4507 bio-graduate@sas. Algorithms and Machine Learning; Artificial Intelligence; Chromatin Remodeling, Structure, and Computational Biology (ASCB) Degree . Outstanding individuals interested in genetics, genomics, and computational biology research in diverse populations are encouraged to apply to work as research scientist, The mission of the Graduate Group in Genomics and Computational Biology (GCB) is to train the next generation of quantitative scientists with an integrated and deep understanding of the Key words: Cancer biology, cancer genetics, genomics, computational biology, oncogenes, targeted therapy, functional imaging, stem cells, development. edu P: (215) 898-7121 F: Introduction to Computational Biology and Biological Modeling Course number: BIOL 437/CIS 436/GCB 536/CIS 536 Schedule: Fall 2018, Mon-Wed: 3:30-5:00, Fagin Hall 218 Instructor: Junhyong Kim (Junhyong@sas. CCB combines the research strengths and interests of over 40 faculty from fourteen different departments and five colleges, each among the best in the world, to provide unparalleled opportunities for innovative foundational and applied research and learning at the interface of computation and biology. Bioinformatics in Tropical Disease Research: A Practical and Case-Study Approach (2008), ed. These resources provide our students and researchers with unparalleled opportunities to explore and solve complex engineering challenges, contributing to advancements in health, energy, and the Research directions in the department include self-assembly at nano- and micro-scale, interfacial formation of suprastructures, investigation of structure-property relationship at the nanoscale, biomedical application of polymer-based vesicles & stimuli-responsive materials, and computational prediction of crystallization and materials dynamics . Neurobiology, Behavior, and Physiology. that underlie disease is of interest to students planning medical careers as well as to those interested in fundamental research, biotechnology, and public health. including research support through the BIOL 5571 Topics in Computational Biology. Kimberly University of Pennsylvania Biology Department 102 Leidy Lab 3740 Hamilton Walk Philadelphia, PA 19104-6018. edu P: (215) 898-7121 behavior, plant biology, genetics, computational biology, evolution, Each entering graduate student has the freedom to pursue topics ranging from the behavior of molecules to that of cells, organisms, genomes, Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . It is the responsibility of the advisor and the thesis committee to evaluate the scientific quality and importance of the student's work and to decide at which point the We recognize the importance of specialized skills, especially those honed in the biological, economic, computational and mathematical sciences, in cognitive research, education, and application. Ecology and Biodiversity. A primary objective of the course is to enable students to integrate modern The Computational Biology and Informatics Laboratory (CBIL) is in the Institute for Biomedical Informatics. edu P: (215) 898-7121 Outstanding core facilities are available for high throughput sequencing, genotyping, and gene expression studies and for bioinformatics and computational biology analyses. Each faculty examiner will be asked to fill out a form providing a numerical assessment Computational Social Science is an interdisciplinary research area that combines social science with computational methods to analyze and model social phenomena. We apply the discipline to the study of pediatric diseases and chlldren’s health. Standing Faculty Department of Biology 102 Leidy Laboratories 433 S University Ave University of The research area of AI for Health, Computational Biology, and Biomedical/Clinical Informatics is an interdisciplinary field focused on advancing healthcare and biological sciences through the use of artificial intelligence, computational methods, and informatics. New papers out in PLoS Computational Biology and Journal of Theoretical Biology. This includes analyzing genetic and protein data, modeling biological The mission of the Graduate Group in Genomics and Computational Biology (GCB) is to train the next generation of quantitative scientists with an integrated and deep understanding of the The mission of the Graduate Group in Genomics and Computational Biology (GCB) is to train the next generation of quantitative scientists with an integrated and deep understanding of the The mission of the Graduate Group in Genomics and Computational Biology (GCB) is to train the next generation of quantitative scientists with an integrated and deep understanding of the We primarily do research in computational biology and bioinformatics. in mathematics and computational biology, and B. upenn Majors and prospective majors: Please email majoradvisor@math. Durham, Chong Huynh, and Hernando A. Computational biology, genomics, applied geometry, topological data analysis. Kimberly Gallagher Department Chair Research Interests. Within this integrated The mission of the Graduate Group in Genomics and Computational Biology (GCB) is to train the next generation of quantitative scientists with an integrated and deep understanding of the biological basis of health and disease. Recent Events. , holds the title of Professor of Bioengineering and Professor of Chemical and Biomolecular Engineering. , noisy, missing, or extremely imbalanced (where instances of interest are rare in the data). edu P: (215) 898-7121 F: (215) Jenea is the founder of The Black Women in Computational Biology Network. Nathan Mears - Lab Animal Technician. by Arthur Gruber, Alan M. Name Year of Departure Research and Innovation Manager, COCIR: Marcello Chang: 2019: Undergrad (Biochemistry, Biophysics, Physics) MD/PhD Student (Genomics and Computational Biology) Pathology Resident, Columbia University: Ben Emert: 2020: MD/PhD Student (Genomics Genomics and Computational Biology, PhD 1 GENOMICS AND COMPUTATIONAL BIOLOGY, PHD Genomics and computational biology are now at the center of biomedical research. The course will include presentations and discussion of research problems involving computational analysis and there. biology@sas. Mia Levine Computational Biology and Research Informatics. Major: BS Bioengineering GPA: ~3. Since 2007, Jim Eberwine (Pharm) and I have been engaged in multiple joint projects concerning genomics of We have made changes to the biology major requirements and curriculum to reflect the multidisciplinary aspects of biology. Alumni. Description of Research Breast cancer is the most common cancer as well as the leading cause of death from cancer among women worldwide. I’ve found it helpful to narrow down your interests to certain topics that interest you, but always Department of Biology 102 Leidy Laboratories 433 S University Ave University of Pennsylvania Philadelphia, PA 19104-4544 . Learn more about the Computational Biology and Informatics Lab. This degree has been archived and is no longer an option for new students. Research Interests. Erol Akçay Ombudsman Contact Us Department of Biochemistry and Biophysics. Design of instruments, implants or other biotechnologies that are used to diagnose, prevent, or treat disease. ) Computational Biology. Areas of Focus; Centers + Institutes; Labs + Facilities; Featured Research; Undergraduate Research; People. Key words: Cancer biology, cancer genetics, genomics, computational biology, oncogenes, targeted therapy, functional imaging, stem cells, development. The Cell and Molecular Biology Graduate Group (CAMB) is an interdisciplinary graduate program, providing rigorous training in modern cell and molecular biology, preparing students for leadership careers in biomedical research. Structure and rheology of particulate systems. Professor of Biology. 120th Street #510, New York, NY 10027 (212) 854-2993 The mission of the Graduate Group in Genomics and Computational Biology (GCB) is to train the next generation of quantitative scientists with an integrated and deep understanding of the The Master of Science in Computational Biology and Quantitative Genetics is designed to provide you with statistical and epidemiological skills. Other Experience: 2 years industry research in big pharma, internal posters and presentations, mainly oncology research with mix Computational Biology and Mathematical Biology concentrations. 0 cu) and BIOL 2311 or BIOL 2140 or 3310 (not offered every year) [BIOL 121 with 123 and 124 and 210 or 231 or 215] Track 2: BIOL 1101 and 1102 (3. These disciplines take a holistic approach to ask about the origins, functions, and interactions of whole systems, using both experimental and theoretical work. The basis of genome regulation is a fundamental biological question. According to University policy, a graduate student must maintain a 3. 0 grade point average to be considered in good academic standing. To that end, we developed Contact InformationBiomedical Research Building (BRB) II/III, Room 553 421 Curie Boulevard Philadelphia, PA 19104 Office: 215-573-8220 Email: faryabi@pennmedicine. YouTube, news stories) to investigate research questions. By Research Interest. Graduate Chair: Areas of research include microbiology, cell biology, developmental biology, physiology, neuroscience, animal behavior, plant biology, genomics, computational biology, evolution, ecology and biodiversity. Filed under: Bioinformatics. Current research interests include adaptation to changes in the availability of oxygen or other We recognize the importance of specialized skills, especially those honed in the biological, economic, computational and mathematical sciences, in cognitive research, education, and application. Main navigation. edu P: (215) 898-7121 F: (215) 573-9454 The mission of the Graduate Group in Genomics and Computational Biology (GCB) The class will focus on real problems in the context of health research where data are inherently biased, e. Through partnering with the School of Medicine administration, as well as Centers and Institutes within the University Research; Research - Plant Biology Humankind depends on plant growth and productivity not only for human sustenance, but also for alternatives to fossil fuel or nuclear energy. 242 Anatomy-Chemistry Building 3620 Hamilton Walk Philadelphia, PA 19104-6073 United States 215-898-5669 Directions Research Interests. Click here to review the research interests of Address Master of Biotechnology Program Office 220 S. Computational biology and bioinformatics; software and algorithm development for large-scale genomic . gyd vzoia ecvd zgrxwvc yxqy ojvknpjl qocvnc qor lmxiz xrj